by Pawel Skudlarski

fMRI code

ROC results (single study)

multi-subject data analysis (ROI analysis)

multi-subject data analysis (composite/contrast maps)

recent (Feb98) developments

more recent (Oct98) developments : ContrastMaps.m

instalation info

changes and updates

examples of fMRI screens

fMRI manual

1. Introductory notes
2. Basic Physics and Physiology of fMRI
3. Structure of this program
4. Typical steps in the analysis of a functional project
5. How to get started on SUN or SGI workstation
6. Setup File - description of the study
7. Running read_fmri
8. Additional data analysis
9. Correlation analysis
10. Fourier analysis
11. Running a Batch Job
12. Viewing Saved Results
13. Registration of images into the Talairach Atlas
14. Combining data from several studies
15. Postprocessing Commands
16. Dictionary of useful commands
17. Using optical disks
18. Some technical details
19. Troubleshooting (before you ask Pawel)
20. short description of some statistics
21. ROI time course